SARS-CoV-2
Prognostic biomarkers in SARS-CoV-2
A free online library of biomarker studies inSARS-CoV-2 / Covid19
DATA MAP
Introduction
SARS-CoV-2 is a novel beta coronavirus of likely zoonotic origin that emerged at the end of 2019 in Wuhan, China1. SARS-CoV-2 differed from previous viral threats in the following manner:
a) Marked transmissibility during the asymptomatic/very early symptomatic stage2, unlike SARS
b) Person-to-person transmission using airborne routes and also via fomites3, unlike Ebola,
c) No previous immunity in the world population, unlike seasonal influenza,
d) No known effective antiviral treatment (with regards to the first wave), unlike HIV, and
e) No prior known effective vaccine (with regards to the first wave).
Due to the ‘perfect storm’ of all the above, SARS-CoV-2 rapidly spread and precipitated an international health crisis that has affected all countries. The associated mortality and morbidity has been a heavy burden. The mortality rate in hospitalized SARS-CoV-2 patients (excluding critical care) is 11.5% ( 95% CI 7.7 – 16.9) and 40.5% (95% CI 31.2 – 50.6) for critical illness4. Although frequently compared to influenza, there is no doubt that SARS-CoV-2 has greater risk of mortality (16.9% for hospitalized SARS-CoV-2 patients versus 5.8% in hospitalized influenza patients, with a relative risk of death of 2·9 (95% CI 2·8-3·0) and an age-standardised mortality ratio of 2·82)5.
Prognostic scores are important to maximize survivorship and minimize morbidity. Sophisticated scoring systems have been proposed but have not performed consistently 6-9. We sought an easily measurable, dependable single-parameter biomarker to predict mortality in swab-positive SARS-CoV-2 patients. Interestingly, our meta-analyses have revealed distinct differences in the effectiveness of different biomarkers in different regions of the world. For example, admission CRP levels are a good prognostic marker for mortality in Asian countries, with a pooled AUC (area under curve) of 0.82 (95% CI [0.79, 0.84]) from 19 studies, but only an average predictor of mortality in Europe and North America, with a pooled AUC of 0.66 (95% CI [0.62, 0.71]) from 18 studies (P<0.0001, Fig. 1).
We have mapped the root studies on this website so that all may see which biomarkers perform well in their locale.
We see the same pattern for D-dimer and IL-6 – they are good predictors of mortality in Asian countries (pooled AUCs of 0.78 [0.74, 0.81] and 0.86 [0.78, 0.91] respectively) but not in Europe and North America (pooled AUCs of 0.69 [0.66, 0.72] and 0.71 [0.64, 0.77] respectively; P<0.001 for both compared to Asian counterparts). This has significant implications and explains why the prognostic scores that are being proposed for SARS-CoV-2 do not perform evenly in different countries.
There are multiple reasons why this might be true. This might be due to genetic differences and the fact that the Asian cohorts are younger than the European/N. American cohorts in all five parameters we investigated (CRP, D-dimer, troponin, urea, and IL-6). It is possible that the principal mode of death is different in Asia, where younger patients are dying from cytokine storm, while in Europe older people are dying from multi-organ failure. It is also possible that there is a ‘training’ effect, with the West having had prior warning and the Asian experience to buffer the storm.
We did find two biomarkers that performed well in all cohorts. Both urea and troponin had pooled AUCs in excess of 0.77 regardless of geographical distribution. This implies that end-organ damage at the time of presentation is a key prognostic indicator of severity.
We have mapped the root studies on this website so that all may see which biomarkers perform well in their locale. We also propose a free-to-use program that the healthcare community can use to check whether their biomarker of choice is effective in their population. We would request that results from this be uploaded so we can periodically update the website.
Biomarkers for mortality and disease severity in SARS-CoV-2
SARS-Cov-2 BIOMARKER CONSORTIUM
Md. Erfanur Shuvo*,1 MBBS
Max Schwiening*,2 BA
Felipe Soares4,5 MSc
Oliver Feng3 PhD
Susana Abreu2 PhD
Will Thomas1 MBBS
Roger Thompson4 PhD
Richard J. Samworth3 PhD
Nicholas Morrell1,2 PhD
Stefan J Marciniak1,2 PhD
Elaine Soon1,2 PhD.
1Department of Respiratory Medicine, Level 5, Box 157, Cambridge University Hospitals NHS
Foundation Trust, Hills Road, Cambridge CB2 0QQ, UK.
2Cambridge Institute for Medical Research, University of Cambridge, Keith Peters Building, Hills Rd, Cambridge CB2 0XY, UK.
3Statistical Laboratory, Centre for Mathematical Sciences, Wilberforce Road, Cambridge, CB3 0WB.
4Department of Infection, Immunity and Cardiovascular Disease The Medical School, Beech Hill Road, Sheffield S10 2RX
5 Universidade Federal do Rio Grande do Sul, Av. Paulo Gama, 110 Secretaria de Comunicação Social – 8º andar – Reitoria – Farroupilha, Porto Alegre – RS, 90040-060, Brazil.
Correspondence to:
Dr Elaine Soon
Cambridge Institute for Medical Research, University of Cambridge, Keith Peters Building, Hills Rd, Cambridge CB2 0XY, UK.
References
1. Hu B, Guo H, Zhou P, et al. Characteristics of SARS-CoV-2 and COVID-19. Nat Rev Microbiol 2021;19(3):141-54. doi: 10.1038/s41579-020-00459-7 [published Online First: 2020/10/08]
2. Yanes-Lane M, Winters N, Fregonese F, et al. Proportion of asymptomatic infection among COVID-19 positive persons and their transmission potential: A systematic review and meta-analysis. PLoS One 2020;15(11):e0241536. doi: 10.1371/journal.pone.0241536 [published Online First: 2020/11/04]
3. Bak A, Mugglestone MA, Ratnaraja NV, et al. SARS-CoV-2 routes of transmission and recommendations for preventing acquisition: joint British Infection Association (BIA), Healthcare Infection Society (HIS), Infection Prevention Society (IPS) and Royal College of Pathologists (RCPath) guidance. J Hosp Infect 2021;114:79-103. doi: 10.1016/j.jhin.2021.04.027 [published Online First: 2021/05/04]
4. Macedo A, Gonçalves N, Febra C. COVID-19 fatality rates in hospitalized patients: systematic review and meta-analysis. Ann Epidemiol 2021;57:14-21. doi: 10.1016/j.annepidem.2021.02.012 [published Online First: 2021/03/05]
5. Piroth L, Cottenet J, Mariet AS, et al. Comparison of the characteristics, morbidity, and mortality of COVID-19 and seasonal influenza: a nationwide, population-based retrospective cohort study. Lancet Respir Med 2021;9(3):251-59. doi: 10.1016/s2213-2600(20)30527-0 [published Online First: 2020/12/21]
6. El-Solh AA, Lawson Y, Carter M, et al. Comparison of in-hospital mortality risk prediction models from COVID-19. PLoS One 2020;15(12):e0244629. doi: 10.1371/journal.pone.0244629 [published Online First: 2020/12/29]
7. Gupta RK, Marks M, Samuels THA, et al. Systematic evaluation and external validation of 22 prognostic models among hospitalised adults with COVID-19: an observational cohort study. Eur Respir J 2020;56(6) doi: 10.1183/13993003.03498-2020 [published Online First: 2020/09/27]
8. Knight SR, Ho A, Pius R, et al. Risk stratification of patients admitted to hospital with covid-19 using the ISARIC WHO Clinical Characterisation Protocol: development and validation of the 4C Mortality Score. Bmj 2020;370:m3339. doi: 10.1136/bmj.m3339 [published Online First: 2020/09/11]
9. Bradley P, Frost F, Tharmaratnam K, et al. Utility of established prognostic scores in COVID-19 hospital admissions: multicentre prospective evaluation of CURB-65, NEWS2 and qSOFA. BMJ Open Respir Res 2020;7(1) doi: 10.1136/bmjresp-2020-000729 [published Online First: 2020/12/10]
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